IL_8AGU_056

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8AGU|1|f|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_056 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1721

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8AGU|1|f|G|1262
8AGU|1|f|A|1263
8AGU|1|f|G|1264
8AGU|1|f|U|1265
8AGU|1|f|G|1266
*
8AGU|1|f|C|1275
8AGU|1|f|U|1276
8AGU|1|f|C|1277

Current chains

Chain f

25S rRNA

Nearby chains

Chain z

60S ribosomal protein L12-B