3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AUGAAGC*GGGU
Length
11 nucleotides
Bulged bases
8AGU|1|f|G|2522, 8AGU|1|f|G|2585, 8AGU|1|f|G|2586
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AGU_099 not in the Motif Atlas
Homologous match to IL_8C3A_106
Geometric discrepancy: 0.0823
The information below is about IL_8C3A_106
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74114.1
Basepair signature
cWW-cWS-cWW-L-R
Number of instances in this motif group
2

Unit IDs

8AGU|1|f|A|2520
8AGU|1|f|U|2521
8AGU|1|f|G|2522
8AGU|1|f|A|2523
8AGU|1|f|A|2524
8AGU|1|f|G|2525
8AGU|1|f|C|2526
*
8AGU|1|f|G|2584
8AGU|1|f|G|2585
8AGU|1|f|G|2586
8AGU|1|f|U|2587

Current chains

Chain f
25S rRNA

Nearby chains

Chain K
60S ribosomal protein L25
Chain i
5.8S ribosomal RNA; 5.8S rRNA
Chain j
60S ribosomal protein L2-A
Chain p
60S ribosomal protein L8-A

Coloring options:


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