IL_8AGU_113

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8AGU|1|f|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_113 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.118

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8AGU|1|f|U|2891
8AGU|1|f|A|2892
*
8AGU|1|f|U|2909
8AGU|1|f|A|2910
8AGU|1|f|A|2911
8AGU|1|f|G|2912

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A