IL_8AGU_115

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8AGU|1|f|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_115 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.0955

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8AGU|1|f|C|2960
8AGU|1|f|G|2961
*
8AGU|1|f|C|2970
8AGU|1|f|A|2971
8AGU|1|f|G|2972

Current chains

Chain f

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain r

60S ribosomal protein L10

Chain v

Eukaryotic translation initiation factor 5A-1

Chain y

Transfer RNA; tRNA