IL_8AGU_117

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_117 not in the Motif Atlas

Homologous match to IL_5TBW_115

Geometric discrepancy: 0.0838

The information below is about IL_5TBW_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8AGU|1|f|A|3012
8AGU|1|f|U|3013
8AGU|1|f|U|3014
*
8AGU|1|f|A|3040
8AGU|1|f|U|3041
8AGU|1|f|U|3042

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3