IL_8AGU_128

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8AGU|1|f|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_128 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.0775

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8AGU|1|f|C|3225
8AGU|1|f|A|3226
8AGU|1|f|A|3227
8AGU|1|f|C|3228
8AGU|1|f|G|3229
*
8AGU|1|f|U|3258
8AGU|1|f|U|3259
8AGU|1|f|G|3260

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain n

60S ribosomal protein L6-B

Chain u

60S ribosomal protein L14-A