3D structure

PDB id
8AGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
8AGV|1|f|C|1196, 8AGV|1|f|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AGV_052 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.0583
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8AGV|1|f|G|1194
8AGV|1|f|A|1195
8AGV|1|f|C|1196
8AGV|1|f|A|1197
8AGV|1|f|C|1198
8AGV|1|f|C|1199
8AGV|1|f|A|1200
8AGV|1|f|C|1201
8AGV|1|f|A|1202
8AGV|1|f|A|1203
8AGV|1|f|A|1204
8AGV|1|f|A|1205
*
8AGV|1|f|U|1299
8AGV|1|f|G|1300
8AGV|1|f|A|1301
8AGV|1|f|A|1302
8AGV|1|f|A|1303
8AGV|1|f|A|1304
8AGV|1|f|U|1305
8AGV|1|f|G|1306
8AGV|1|f|G|1307
8AGV|1|f|A|1308
8AGV|1|f|U|1309
8AGV|1|f|G|1310
8AGV|1|f|G|1311
8AGV|1|f|C|1312
8AGV|1|f|G|1313
8AGV|1|f|C|1314

Current chains

Chain f
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L16-A
Chain S
60S ribosomal protein L33-A
Chain Z
Ubiquitin-60S ribosomal protein L40
Chain h
5S ribosomal RNA; 5S rRNA
Chain k
60S ribosomal protein L3
Chain o
60S ribosomal protein L7-A
Chain r
60S ribosomal protein L10

Coloring options:


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