IL_8AGV_077

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8AGV|1|f|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_077 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0888

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8AGV|1|f|A|1901
8AGV|1|f|G|1902
8AGV|1|f|U|1903
8AGV|1|f|C|1904
8AGV|1|f|G|1905
8AGV|1|f|G|1906
*
8AGV|1|f|C|2333
8AGV|1|f|U|2334
8AGV|1|f|G|2335
8AGV|1|f|U|2336

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3