IL_8AGV_078

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8AGV|1|f|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_078 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0591

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8AGV|1|f|C|1918
8AGV|1|f|G|1919
8AGV|1|f|U|1920
8AGV|1|f|A|1921
8AGV|1|f|A|1922
8AGV|1|f|C|1923
*
8AGV|1|f|G|1928
8AGV|1|f|G|1929
8AGV|1|f|A|1930
8AGV|1|f|U|1931
8AGV|1|f|A|1932
8AGV|1|f|A|1933
8AGV|1|f|G|1934

Current chains

Chain f

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L19-A

Chain c

60S ribosomal protein L43-A