IL_8AGV_089

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8AGV|1|f|A|2281, 8AGV|1|f|C|2287, 8AGV|1|f|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_089 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0662

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8AGV|1|f|C|2277
8AGV|1|f|C|2278
8AGV|1|f|A|2279
8AGV|1|f|A|2280
8AGV|1|f|A|2281
8AGV|1|f|U|2282
8AGV|1|f|G|2283
8AGV|1|f|C|2284
8AGV|1|f|C|2285
8AGV|1|f|U|2286
8AGV|1|f|C|2287
8AGV|1|f|G|2288
*
8AGV|1|f|C|2304
8AGV|1|f|G|2305
8AGV|1|f|C|2306
8AGV|1|f|G|2307

Current chains

Chain f

25S rRNA

Nearby chains

Chain x

Transfer RNA; tRNA