IL_8AGV_098

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_098 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.2868

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8AGV|1|f|G|2466
8AGV|1|f|G|2467
8AGV|1|f|A|2468
8AGV|1|f|G|2469
*
8AGV|1|f|C|2476
8AGV|1|f|G|2477
8AGV|1|f|C|2478
8AGV|1|f|C|2479
8AGV|1|f|A|2480
8AGV|1|f|G|2481
8AGV|1|f|U|2482
8AGV|1|f|G|2483
8AGV|1|f|A|2484
8AGV|1|f|A|2485
8AGV|1|f|A|2486
8AGV|1|f|U|2487
8AGV|1|f|A|2488
8AGV|1|f|C|2489

Current chains

Chain f

25S rRNA

Nearby chains

Chain w

60S ribosomal protein L1-A