IL_8AGV_116
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 8AGV|1|f|A|3142, 8AGV|1|f|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGV_116 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.0745
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8AGV|1|f|C|3004
8AGV|1|f|A|3005
8AGV|1|f|A|3006
8AGV|1|f|U|3007
*
8AGV|1|f|A|3139
8AGV|1|f|G|3140
8AGV|1|f|A|3141
8AGV|1|f|A|3142
8AGV|1|f|C|3143
8AGV|1|f|G|3144
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L16-A
- Chain k
- 60S ribosomal protein L3
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