IL_8AGV_145

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

8AGV|1|h|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_145 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.07

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8AGV|1|h|A|84
8AGV|1|h|G|85
8AGV|1|h|U|86
8AGV|1|h|G|87
*
8AGV|1|h|C|94
8AGV|1|h|A|95
8AGV|1|h|U|96

Current chains

Chain h

5S rRNA

Nearby chains

Chain F

60S ribosomal protein L20-A

Chain f

Large subunit ribosomal RNA; LSU rRNA

Chain o

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L10