3D structure

PDB id
8AGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GGCU*GAUUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AGV_154 not in the Motif Atlas
Homologous match to IL_8C3A_111
Geometric discrepancy: 0.0728
The information below is about IL_8C3A_111
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50458.1
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
5

Unit IDs

8AGV|1|f|G|2823
8AGV|1|f|G|2824
8AGV|1|f|C|2825
8AGV|1|f|U|2826
*
8AGV|1|f|G|2863
8AGV|1|f|A|2864
8AGV|1|f|U|2865
8AGV|1|f|U|2866
8AGV|1|f|C|2867

Current chains

Chain f
25S rRNA

Nearby chains

Chain O
60S ribosomal protein L29
Chain r
60S ribosomal protein L10
Chain x
Transfer RNA; tRNA

Coloring options:


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