IL_8AGW_078
3D structure
- PDB id
- 8AGW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8AGW|1|f|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGW_078 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.0591
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8AGW|1|f|C|1918
8AGW|1|f|G|1919
8AGW|1|f|U|1920
8AGW|1|f|A|1921
8AGW|1|f|A|1922
8AGW|1|f|C|1923
*
8AGW|1|f|G|1928
8AGW|1|f|G|1929
8AGW|1|f|A|1930
8AGW|1|f|U|1931
8AGW|1|f|A|1932
8AGW|1|f|A|1933
8AGW|1|f|G|1934
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L19-A
- Chain c
- 60S ribosomal protein L43-A
Coloring options: