IL_8AGW_086

3D structure

PDB id

8AGW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGW_086 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.1774

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8AGW|1|f|G|2206
8AGW|1|f|A|2207
8AGW|1|f|A|2208
8AGW|1|f|U|2209
8AGW|1|f|G|2210
*
8AGW|1|f|C|2235
8AGW|1|f|G|2236
8AGW|1|f|C|2237

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

RQC2 isoform 1

Chain j

60S ribosomal protein L2-A