IL_8AGW_089

3D structure

PDB id

8AGW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8AGW|1|f|A|2281, 8AGW|1|f|C|2287, 8AGW|1|f|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGW_089 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0746

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8AGW|1|f|C|2277
8AGW|1|f|C|2278
8AGW|1|f|A|2279
8AGW|1|f|A|2280
8AGW|1|f|A|2281
8AGW|1|f|U|2282
8AGW|1|f|G|2283
8AGW|1|f|C|2284
8AGW|1|f|C|2285
8AGW|1|f|U|2286
8AGW|1|f|C|2287
8AGW|1|f|G|2288
*
8AGW|1|f|C|2304
8AGW|1|f|G|2305
8AGW|1|f|C|2306
8AGW|1|f|G|2307

Current chains

Chain f

25S rRNA

Nearby chains

Chain x

Transfer RNA; tRNA