IL_8AGW_109
3D structure
- PDB id
- 8AGW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 8AGW|1|f|G|2945, 8AGW|1|f|A|2946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGW_109 not in the Motif Atlas
- Homologous match to IL_8C3A_116
- Geometric discrepancy: 0.0392
- The information below is about IL_8C3A_116
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8AGW|1|f|C|2879
8AGW|1|f|U|2880
8AGW|1|f|C|2881
*
8AGW|1|f|G|2943
8AGW|1|f|U|2944
8AGW|1|f|G|2945
8AGW|1|f|A|2946
8AGW|1|f|G|2947
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L23-A
- Chain k
- 60S ribosomal protein L3
Coloring options: