IL_8AGX_039

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_039 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.1029

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8AGX|1|f|A|997
8AGX|1|f|A|998
*
8AGX|1|f|U|1050
8AGX|1|f|U|1051
8AGX|1|f|U|1052

Current chains

Chain f

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L21-A

Chain h

5S ribosomal RNA; 5S rRNA

Chain m

60S ribosomal protein L5

Chain r

60S ribosomal protein L10