IL_8AGX_052
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8AGX|1|f|C|1196, 8AGX|1|f|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_052 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0583
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8AGX|1|f|G|1194
8AGX|1|f|A|1195
8AGX|1|f|C|1196
8AGX|1|f|A|1197
8AGX|1|f|C|1198
8AGX|1|f|C|1199
8AGX|1|f|A|1200
8AGX|1|f|C|1201
8AGX|1|f|A|1202
8AGX|1|f|A|1203
8AGX|1|f|A|1204
8AGX|1|f|A|1205
*
8AGX|1|f|U|1299
8AGX|1|f|G|1300
8AGX|1|f|A|1301
8AGX|1|f|A|1302
8AGX|1|f|A|1303
8AGX|1|f|A|1304
8AGX|1|f|U|1305
8AGX|1|f|G|1306
8AGX|1|f|G|1307
8AGX|1|f|A|1308
8AGX|1|f|U|1309
8AGX|1|f|G|1310
8AGX|1|f|G|1311
8AGX|1|f|C|1312
8AGX|1|f|G|1313
8AGX|1|f|C|1314
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L33-A
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain h
- 5S ribosomal RNA; 5S rRNA
- Chain k
- 60S ribosomal protein L3
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L10
Coloring options: