IL_8AGX_059
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8AGX|1|f|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_059 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0757
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8AGX|1|f|U|1388
8AGX|1|f|G|1389
8AGX|1|f|A|1390
8AGX|1|f|C|1391
8AGX|1|f|G|1392
8AGX|1|f|A|1393
8AGX|1|f|A|1394
8AGX|1|f|G|1395
*
8AGX|1|f|U|1415
8AGX|1|f|C|1416
8AGX|1|f|G|1417
8AGX|1|f|A|1418
8AGX|1|f|A|1419
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L17-A
- Chain L
- 60S ribosomal protein L26-A
- Chain R
- 60S ribosomal protein L32
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- 60S ribosomal protein L4-A
- Chain n
- 60S ribosomal protein L6-B
Coloring options: