IL_8AGX_064

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_064 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.0751

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8AGX|1|f|G|1618
8AGX|1|f|A|1619
8AGX|1|f|U|1620
8AGX|1|f|A|1621
*
8AGX|1|f|U|1824
8AGX|1|f|G|1825
8AGX|1|f|C|1826

Current chains

Chain f

25S rRNA

Nearby chains

Chain X

60S ribosomal protein L38

Chain d

60S ribosomal protein L41-A

Chain i

5.8S ribosomal RNA; 5.8S rRNA