IL_8AGX_086
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_086 not in the Motif Atlas
- Homologous match to IL_5TBW_087
- Geometric discrepancy: 0.3009
- The information below is about IL_5TBW_087
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.5
- Basepair signature
- cWW-cHS-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8AGX|1|f|G|2206
8AGX|1|f|A|2207
8AGX|1|f|A|2208
8AGX|1|f|U|2209
8AGX|1|f|G|2210
*
8AGX|1|f|C|2235
8AGX|1|f|G|2236
8AGX|1|f|C|2237
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
- Chain w
- 60S ribosomal protein L1-A
Coloring options: