IL_8AGX_098
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGAG*CGCCAGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_098 not in the Motif Atlas
- Geometric match to IL_3U4M_003
- Geometric discrepancy: 0.2868
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
8AGX|1|f|G|2466
8AGX|1|f|G|2467
8AGX|1|f|A|2468
8AGX|1|f|G|2469
*
8AGX|1|f|C|2476
8AGX|1|f|G|2477
8AGX|1|f|C|2478
8AGX|1|f|C|2479
8AGX|1|f|A|2480
8AGX|1|f|G|2481
8AGX|1|f|U|2482
8AGX|1|f|G|2483
8AGX|1|f|A|2484
8AGX|1|f|A|2485
8AGX|1|f|A|2486
8AGX|1|f|U|2487
8AGX|1|f|A|2488
8AGX|1|f|C|2489
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain w
- 60S ribosomal protein L1-A
Coloring options: