IL_8AGX_110

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8AGX|1|f|G|2945, 8AGX|1|f|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_110 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0919

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8AGX|1|f|C|2879
8AGX|1|f|U|2880
8AGX|1|f|C|2881
*
8AGX|1|f|G|2943
8AGX|1|f|U|2944
8AGX|1|f|G|2945
8AGX|1|f|A|2946
8AGX|1|f|G|2947

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3