IL_8AGX_126
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8AGX|1|f|A|3180, 8AGX|1|f|A|3186, 8AGX|1|f|U|3207, 8AGX|1|f|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_126 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0755
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8AGX|1|f|U|3179
8AGX|1|f|A|3180
8AGX|1|f|C|3181
8AGX|1|f|G|3182
8AGX|1|f|A|3183
8AGX|1|f|A|3184
8AGX|1|f|U|3185
8AGX|1|f|A|3186
8AGX|1|f|A|3187
8AGX|1|f|G|3188
*
8AGX|1|f|C|3204
8AGX|1|f|G|3205
8AGX|1|f|C|3206
8AGX|1|f|U|3207
8AGX|1|f|G|3208
8AGX|1|f|A|3209
8AGX|1|f|A|3210
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L16-A
- Chain F
- 60S ribosomal protein L20-A
- Chain S
- 60S ribosomal protein L33-A
- Chain n
- 60S ribosomal protein L6-B
- Chain q
- 60S ribosomal protein L9-A
- Chain u
- 60S ribosomal protein L14-A
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