IL_8AGX_146
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_146 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0522
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8AGX|1|i|A|44
8AGX|1|i|C|45
8AGX|1|i|G|46
8AGX|1|i|C|47
8AGX|1|i|A|48
8AGX|1|i|G|49
8AGX|1|i|C|50
8AGX|1|i|G|51
8AGX|1|i|A|52
8AGX|1|i|A|53
8AGX|1|i|A|54
8AGX|1|i|U|55
8AGX|1|i|G|56
8AGX|1|i|C|57
8AGX|1|i|G|58
8AGX|1|i|A|59
8AGX|1|i|U|60
8AGX|1|i|A|61
8AGX|1|i|C|62
8AGX|1|i|G|63
8AGX|1|i|U|64
*
8AGX|1|i|A|96
8AGX|1|i|A|97
8AGX|1|i|U|98
8AGX|1|i|C|99
8AGX|1|i|U|100
Current chains
- Chain i
- 5.8S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L25
- Chain U
- 60S ribosomal protein L35-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: