IL_8AGZ_082
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8AGZ|1|f|U|2159, 8AGZ|1|f|U|2175, 8AGZ|1|f|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_082 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0633
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8AGZ|1|f|C|2156
8AGZ|1|f|G|2157
8AGZ|1|f|A|2158
8AGZ|1|f|U|2159
8AGZ|1|f|G|2160
8AGZ|1|f|G|2161
*
8AGZ|1|f|U|2173
8AGZ|1|f|G|2174
8AGZ|1|f|U|2175
8AGZ|1|f|U|2176
8AGZ|1|f|G|2177
8AGZ|1|f|A|2178
8AGZ|1|f|C|2179
8AGZ|1|f|G|2180
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- RQC2 isoform 1
- Chain c
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
Coloring options: