IL_8AGZ_084

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8AGZ|1|f|A|2242, 8AGZ|1|f|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGZ_084 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0724

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8AGZ|1|f|U|2200
8AGZ|1|f|G|2201
*
8AGZ|1|f|U|2241
8AGZ|1|f|A|2242
8AGZ|1|f|A|2243
8AGZ|1|f|A|2244

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

RQC2 isoform 1

Chain j

60S ribosomal protein L2-A

Chain v

Eukaryotic translation initiation factor 5A-1