IL_8AGZ_087
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_087 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1305
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8AGZ|1|f|U|2211
8AGZ|1|f|C|2212
8AGZ|1|f|A|2213
8AGZ|1|f|A|2214
8AGZ|1|f|A|2215
8AGZ|1|f|G|2216
8AGZ|1|f|U|2217
*
8AGZ|1|f|A|2228
8AGZ|1|f|A|2229
8AGZ|1|f|C|2230
8AGZ|1|f|C|2231
8AGZ|1|f|A|2232
8AGZ|1|f|A|2233
8AGZ|1|f|G|2234
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain V
- 60S ribosomal protein L36-A
- Chain a
- RQC2 isoform 1
- Chain b
- 60S ribosomal protein L42-A
- Chain w
- 60S ribosomal protein L1-A
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