IL_8AGZ_089
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8AGZ|1|f|A|2281, 8AGZ|1|f|C|2287, 8AGZ|1|f|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_089 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0662
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8AGZ|1|f|C|2277
8AGZ|1|f|C|2278
8AGZ|1|f|A|2279
8AGZ|1|f|A|2280
8AGZ|1|f|A|2281
8AGZ|1|f|U|2282
8AGZ|1|f|G|2283
8AGZ|1|f|C|2284
8AGZ|1|f|C|2285
8AGZ|1|f|U|2286
8AGZ|1|f|C|2287
8AGZ|1|f|G|2288
*
8AGZ|1|f|C|2304
8AGZ|1|f|G|2305
8AGZ|1|f|C|2306
8AGZ|1|f|G|2307
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain x
- Transfer RNA; tRNA
Coloring options: