IL_8AKN_012
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8AKN|1|B|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AKN_012 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1107
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8AKN|1|B|G|147
8AKN|1|B|G|148
8AKN|1|B|A|149
8AKN|1|B|U|150
8AKN|1|B|A|151
8AKN|1|B|A|152
8AKN|1|B|C|153
*
8AKN|1|B|G|168
8AKN|1|B|C|169
8AKN|1|B|U|170
8AKN|1|B|A|171
8AKN|1|B|A|172
8AKN|1|B|U|173
8AKN|1|B|A|174
8AKN|1|B|C|175
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain U
- 30S ribosomal protein S20
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