IL_8AKN_024

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8AKN|1|B|A|532, 8AKN|1|B|U|534, 8AKN|1|B|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_024 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.1101

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8AKN|1|B|G|515
8AKN|1|B|PSU|516
8AKN|1|B|G|517
8AKN|1|B|C|518
8AKN|1|B|C|519
8AKN|1|B|A|520
8AKN|1|B|G|521
*
8AKN|1|B|C|528
8AKN|1|B|G|529
8AKN|1|B|G|530
8AKN|1|B|U|531
8AKN|1|B|A|532
8AKN|1|B|A|533
8AKN|1|B|U|534
8AKN|1|B|A|535
8AKN|1|B|C|536

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain E

30S ribosomal protein S4

Chain M

30S ribosomal protein S12

Chain W

Peptide chain release factor RF1

Chain Y

mRNA