IL_8AKN_035
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGGAG*UC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AKN_035 not in the Motif Atlas
- Homologous match to IL_4LFB_032
- Geometric discrepancy: 0.0614
- The information below is about IL_4LFB_032
- Detailed Annotation
- Left turn
- Broad Annotation
- Left turn
- Motif group
- IL_29346.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8AKN|1|B|G|774
8AKN|1|B|G|775
8AKN|1|B|G|776
8AKN|1|B|A|777
8AKN|1|B|G|778
*
8AKN|1|B|U|804
8AKN|1|B|C|805
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: