IL_8AKN_058
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- G(4OC)CC*G(UR3)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AKN_058 not in the Motif Atlas
- Homologous match to IL_5J7L_059
- Geometric discrepancy: 0.1063
- The information below is about IL_5J7L_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8AKN|1|B|G|1401
8AKN|1|B|4OC|1402
8AKN|1|B|C|1403
8AKN|1|B|C|1404
*
8AKN|1|B|G|1497
8AKN|1|B|UR3|1498
8AKN|1|B|A|1499
8AKN|1|B|A|1500
8AKN|1|B|C|1501
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain W
- Peptide chain release factor RF1
- Chain X
- Transfer RNA; tRNA
- Chain Y
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: