3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8AKN|1|a|G|801, 8AKN|1|a|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AKN_080 not in the Motif Atlas
Geometric match to IL_7RQB_018
Geometric discrepancy: 0.0502
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8AKN|1|a|G|674
8AKN|1|a|A|675
8AKN|1|a|A|676
8AKN|1|a|A|677
8AKN|1|a|C|678
*
8AKN|1|a|G|799
8AKN|1|a|A|800
8AKN|1|a|G|801
8AKN|1|a|A|802
8AKN|1|a|U|803
8AKN|1|a|A|804
8AKN|1|a|G|805
8AKN|1|a|C|806

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain k
50S ribosomal protein L15

Coloring options:


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