3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
8AKN|1|a|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AKN_104 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.1381
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

8AKN|1|a|C|1043
8AKN|1|a|C|1044
8AKN|1|a|C|1045
8AKN|1|a|A|1046
8AKN|1|a|G|1047
8AKN|1|a|A|1048
8AKN|1|a|C|1049
8AKN|1|a|A|1050
8AKN|1|a|G|1051
*
8AKN|1|a|U|1108
8AKN|1|a|C|1109
8AKN|1|a|G|1110
8AKN|1|a|A|1111
8AKN|1|a|G|1112

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3715 s
Application loaded.