IL_8AKN_122

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_122 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.0879

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8AKN|1|a|C|1526
8AKN|1|a|G|1527
8AKN|1|a|A|1528
8AKN|1|a|G|1529
*
8AKN|1|a|U|1542
8AKN|1|a|G|1543
8AKN|1|a|A|1544
8AKN|1|a|A|1545
8AKN|1|a|G|1546

Current chains

Chain a

23S ribosomal RNA

Nearby chains