IL_8AKN_154

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8AKN|1|a|G|2576, 8AKN|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_154 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8AKN|1|a|C|2510
8AKN|1|a|U|2511
8AKN|1|a|C|2512
*
8AKN|1|a|G|2574
8AKN|1|a|C|2575
8AKN|1|a|G|2576
8AKN|1|a|A|2577
8AKN|1|a|G|2578

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Drosocin1

Chain W

Peptide chain release factor RF1

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32