IL_8AKN_175
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AKN_175 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.054
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8AKN|1|B|A|673
8AKN|1|B|G|674
8AKN|1|B|A|675
8AKN|1|B|A|676
8AKN|1|B|U|677
*
8AKN|1|B|G|713
8AKN|1|B|G|714
8AKN|1|B|A|715
8AKN|1|B|A|716
8AKN|1|B|U|717
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S6, fully modified isoform
- Chain L
- 30S ribosomal protein S11
- Chain S
- 30S ribosomal protein S18
- Chain V
- 30S ribosomal protein S21
- Chain c
- 50S ribosomal protein L2
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