IL_8AKN_183

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0491

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8AKN|1|a|U|1851
8AKN|1|a|U|1852
8AKN|1|a|A|1853
8AKN|1|a|A|1854
8AKN|1|a|U|1855
8AKN|1|a|U|1856
8AKN|1|a|G|1857
8AKN|1|a|A|1858
8AKN|1|a|U|1859
8AKN|1|a|G|1860
*
8AKN|1|a|U|1882
8AKN|1|a|U|1883
8AKN|1|a|G|1884
8AKN|1|a|A|1885
8AKN|1|a|U|1886
8AKN|1|a|C|1887
8AKN|1|a|G|1888
8AKN|1|a|A|1889
8AKN|1|a|A|1890
8AKN|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA