IL_8AM9_012
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8AM9|1|B|U|244, 8AM9|1|B|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AM9_012 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.1234
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8AM9|1|B|G|242
8AM9|1|B|A|243
8AM9|1|B|U|244
8AM9|1|B|U|245
8AM9|1|B|A|246
8AM9|1|B|G|247
*
8AM9|1|B|C|277
8AM9|1|B|G|278
8AM9|1|B|A|279
8AM9|1|B|C|280
8AM9|1|B|G|281
8AM9|1|B|A|282
8AM9|1|B|U|283
8AM9|1|B|C|284
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain M
- 30S ribosomal protein S12
- Chain R
- 30S ribosomal protein S17
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