IL_8AM9_023
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8AM9|1|B|A|532, 8AM9|1|B|U|534, 8AM9|1|B|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AM9_023 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1295
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8AM9|1|B|G|515
8AM9|1|B|PSU|516
8AM9|1|B|G|517
8AM9|1|B|C|518
8AM9|1|B|C|519
8AM9|1|B|A|520
8AM9|1|B|G|521
*
8AM9|1|B|C|528
8AM9|1|B|G|529
8AM9|1|B|G|530
8AM9|1|B|U|531
8AM9|1|B|A|532
8AM9|1|B|A|533
8AM9|1|B|U|534
8AM9|1|B|A|535
8AM9|1|B|C|536
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain D
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S4
- Chain M
- 30S ribosomal protein S12
- Chain X
- mRNA
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