IL_8AM9_085

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

8AM9|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_085 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8AM9|1|a|U|847
8AM9|1|a|C|848
*
8AM9|1|a|G|930
8AM9|1|a|U|931
8AM9|1|a|U|932
8AM9|1|a|A|933

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

50S ribosomal protein L30