IL_8AM9_103

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8AM9|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_103 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0772

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8AM9|1|a|C|1208
8AM9|1|a|U|1209
8AM9|1|a|G|1210
8AM9|1|a|C|1211
8AM9|1|a|G|1212
8AM9|1|a|A|1213
8AM9|1|a|A|1214
8AM9|1|a|G|1215
*
8AM9|1|a|U|1234
8AM9|1|a|G|1235
8AM9|1|a|G|1236
8AM9|1|a|A|1237
8AM9|1|a|G|1238

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20