IL_8AM9_171

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGA*UAA

Length

7 nucleotides

Bulged bases

8AM9|1|B|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_171 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1857

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8AM9|1|B|U|29
8AM9|1|B|U|30
8AM9|1|B|G|31
8AM9|1|B|A|32
*
8AM9|1|B|U|552
8AM9|1|B|A|553
8AM9|1|B|A|554

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4

Chain M

30S ribosomal protein S12