IL_8AM9_179

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_179 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0526

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8AM9|1|a|G|1666
8AM9|1|a|G|1667
8AM9|1|a|A|1668
8AM9|1|a|A|1669
8AM9|1|a|C|1670
8AM9|1|a|U|1671
8AM9|1|a|A|1672
8AM9|1|a|G|1673
8AM9|1|a|G|1674
*
8AM9|1|a|C|1990
8AM9|1|a|U|1991
8AM9|1|a|G|1992
8AM9|1|a|U|1993
8AM9|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14