IL_8AM9_180

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0698

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8AM9|1|a|U|1851
8AM9|1|a|U|1852
8AM9|1|a|A|1853
8AM9|1|a|A|1854
8AM9|1|a|U|1855
8AM9|1|a|U|1856
8AM9|1|a|G|1857
8AM9|1|a|A|1858
8AM9|1|a|U|1859
8AM9|1|a|G|1860
*
8AM9|1|a|U|1882
8AM9|1|a|U|1883
8AM9|1|a|G|1884
8AM9|1|a|A|1885
8AM9|1|a|U|1886
8AM9|1|a|C|1887
8AM9|1|a|G|1888
8AM9|1|a|A|1889
8AM9|1|a|A|1890
8AM9|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains