IL_8ANA_016

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8ANA|1|a|G|801, 8ANA|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ANA_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0517

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8ANA|1|a|G|674
8ANA|1|a|A|675
8ANA|1|a|A|676
8ANA|1|a|A|677
8ANA|1|a|C|678
*
8ANA|1|a|G|799
8ANA|1|a|A|800
8ANA|1|a|G|801
8ANA|1|a|A|802
8ANA|1|a|U|803
8ANA|1|a|A|804
8ANA|1|a|G|805
8ANA|1|a|C|806

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15