3D structure

PDB id
8ANA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGAG*UGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ANA_056 not in the Motif Atlas
Homologous match to IL_5J7L_303
Geometric discrepancy: 0.0948
The information below is about IL_5J7L_303
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

8ANA|1|a|C|1526
8ANA|1|a|G|1527
8ANA|1|a|A|1528
8ANA|1|a|G|1529
*
8ANA|1|a|U|1542
8ANA|1|a|G|1543
8ANA|1|a|A|1544
8ANA|1|a|A|1545
8ANA|1|a|G|1546

Current chains

Chain a
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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